| 1 |
#!/usr/bin/env python |
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from torque_utils import pbsnodes |
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|
| 4 |
# this config allows mcore to run up to full ATLAS allocation (07.04.2015) |
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# full allocation right now is 47% of "non-retired" capacity = knal + mars + car |
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# just configure 47% of each class. |
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|
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MAXDRAIN = 32 # max num of nodes allowed to drain |
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MAXFREE = 49 # max num of free slots to tolerate |
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MAXFREEPERNODE = 3 |
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NODESPERGRAB = 3 # number of nodes to grab each time around |
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|
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# parameterize percent capacity -- 47% is too conservative, make this variable. |
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|
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CAPACFRAC = 0.60 |
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CANDIDATE_NODES = [ 'wn-car-0%02d.farm.nikhef.nl' % (n) for n in range(1, int(CAPACFRAC*96)+1) ] + \ |
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[ 'wn-knal-0%02d.farm.nikhef.nl' % (n) for n in range(1,int(CAPACFRAC*18)+1) ] + \ |
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[ 'wn-mars-0%02d.farm.nikhef.nl' % (n) for n in range(20,20+int(CAPACFRAC*57)+1) ] |
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|
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MCQUEUE = 'atlasmc' |
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|
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# settings below appropriate for knal nodes (32 cores) |
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# ... want to keep num of draining nodes |
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# to MAXFREE / 3 since giving back a node could be expensive. |
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# it might already be running several mc jobs |
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|
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# MAXDRAIN = 16 # max num of nodes allowed to drain |
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# MAXFREE = 49 # max num of free slots to tolerate |
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# MAXFREEPERNODE = 3 |
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# NODESPERGRAB = 1 |
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# CANDIDATE_NODES = [ 'wn-knal-0%02d.farm.nikhef.nl' % (n) for n in range(1,19) ] |
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# MCQUEUE = 'atlasmc' |
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|
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# settings below more appropriate for smrt nodes (8 core) |
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# here giving a node back doesn't really matter, it wasn't |
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# running any mc jobs yet anyway. better to grab lots |
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# of nodes and give back the ones that drain the slowest if |
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# too many slots are free. |
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|
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# MAXDRAIN = 16 # max num of nodes allowed to drain |
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# MAXFREE = 49 # max num of free slots to tolerate |
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# CANDIDATE_NODES = [ 'wn-smrt-0%02d.farm.nikhef.nl' % (n) for n in range(1,73) ] |
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|
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UNDERPOP_NODES_FILE = ".nodes_with_too_few_jobs" |
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TORQUE = "stro.nikhef.nl" |
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|
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import os |
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import pickle |
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import sys |
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import subprocess |
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|
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def getmcjobinfo(nodes): |
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|
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# input is the list of nodes for which to get info |
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# function returns tuple (jobs_waiting, node_info) |
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# jobs_waiting boolean value : are there MC jobs waiting to be run (state Q)? (independent of nodes!) |
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# node_info: list of tuples (wn_name, wn, num_running_mc, num_free_slots) |
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# where wn is the node object for the machine with name wn_name, num_running_mc is the number of |
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# mc jobs running on that node, and num_free_slots is the number of unused job slots on that node |
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|
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usedkeys = ['egroup', 'jobid', 'queue', 'job_state', 'euser', 'exec_host' ] |
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|
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import torqueJobs |
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import torqueAttMappers as tam |
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|
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import tempfile |
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qsfname = tempfile.mktemp(".txt","qsmf",os.environ['HOME']+"/tmp") |
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|
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import time |
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os.system('/usr/bin/qstat -f @' + TORQUE + ' > ' + qsfname) |
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now = time.mktime(time.localtime()) |
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|
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jlist = torqueJobs.qs_parsefile(qsfname) |
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|
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os.system('mv ' + qsfname + ' ' + os.environ['HOME'] + '/tmp/qstat.last.txt') |
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|
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def mapatts(indict,inkeys): |
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sdict = tam.sub_dict(indict,inkeys) |
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odict = dict() |
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for k in sdict.keys(): |
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if k in tam.tfl and sdict[k]: |
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secs = tam.hms(sdict[k]) |
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sdict[k] = secs/3600. |
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if k in tam.mfl and sdict[k]: |
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mebi = tam.memconvert(sdict[k]) |
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sdict[k] = mebi |
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if k in tam.tfl2 and sdict[k]: |
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secs = tam.tconv(sdict[k]) |
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sdict[k] = secs |
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elif k == 'job_state': |
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statelett = sdict[k] |
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if statelett in ['Q','W']: |
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sdict[k] = 'queued' |
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elif statelett in ['R','E']: |
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sdict[k] = 'running' |
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elif k == 'exec_host' and sdict[k]: |
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termpos = sdict[k].find('/') |
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wnstring = sdict[k][:termpos] |
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sdict[k] = wnstring |
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if sdict[k]: |
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odict[k] = sdict[k] |
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return odict |
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|
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mcjoblist = list() |
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waitingJobs = False |
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for j in jlist: |
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if j['queue'] == MCQUEUE: |
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newj = mapatts(j,usedkeys) |
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mcjoblist.append(newj) |
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if newj['job_state'] == 'queued': |
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waitingJobs = True |
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|
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# find out how many running mc jobs each node has |
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|
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running_mc = dict() |
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for n in nodes: |
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running_mc[n.name] = 0 |
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for j in mcjoblist: |
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if j['job_state'] =='running': |
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wn = j['exec_host'] |
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if wn in running_mc.keys(): |
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running_mc[wn] += 1 |
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rawlist = list() |
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for n in nodes: |
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rawlist.append( (n.name, n, running_mc[n.name], n.freeCpu) ) |
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from operator import itemgetter |
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def srtrunningfree(item): |
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# sort optimal for dropping nodes; for nodes with zero running mc jobs, want to |
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# drop least-drained nodes (fewer free slots first in list); for nodes with |
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# running mc jobs, want to shed as few nodes as possible so pick the more-drained |
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# nodes first. this probably also works for shedding nodes when queue dries up. |
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mcrun = item[2] |
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emptyslots = item[3] |
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if mcrun == 0: |
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rank = emptyslots |
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else: |
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# the original "optimal" order: rank = 32*mcrun - emptyslots # 32 just a number bigger than expected emptyslots value |
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rank = 7168 - 224*float(emptyslots)/mcrun + mcrun # constants 7168 and 224 only serve to enable a multi-level sort. |
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return rank |
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slist = sorted(rawlist, key=srtrunningfree) |
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|
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return waitingJobs, slist |
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|
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def remove_from_mc_pool(node): |
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# print "adding el6 tag back to node", node.name |
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if "el6" not in node.properties : |
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proc = subprocess.Popen(['/usr/bin/qmgr'], |
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stdin=subprocess.PIPE, |
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stdout=subprocess.PIPE,) |
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proc.stdin.write( 'set node ' + node.name + \ |
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' properties += el6\n' ) |
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proc.stdin.write( 'print node ' + node.name + \ |
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' properties\n' ) |
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out = proc.communicate()[0] |
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# print out |
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if "mc" in node.properties : |
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proc = subprocess.Popen(['/usr/bin/qmgr'], |
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stdin=subprocess.PIPE, |
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stdout=subprocess.PIPE,) |
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proc.stdin.write( 'set node ' + node.name + \ |
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' properties -= mc\n' ) |
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proc.stdin.write( 'print node ' + node.name + \ |
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' properties\n' ) |
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out = proc.communicate()[0] |
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# print out |
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|
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def add_to_mc_pool(node): |
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# print "node props b4:", grabbed_node.properties |
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if "el6" in node.properties : |
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proc = subprocess.Popen(['/usr/bin/qmgr'], |
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stdin=subprocess.PIPE, |
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stdout=subprocess.PIPE,) |
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proc.stdin.write( 'set node ' + node.name + \ |
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' properties -= el6\n' ) |
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proc.stdin.write( 'print node ' + node.name + \ |
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' properties\n' ) |
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out = proc.communicate()[0] |
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|
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if "mc" not in node.properties : |
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proc = subprocess.Popen(['/usr/bin/qmgr'], |
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stdin=subprocess.PIPE, |
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stdout=subprocess.PIPE,) |
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proc.stdin.write( 'set node ' + node.name + \ |
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' properties += mc\n' ) |
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proc.stdin.write( 'print node ' + node.name + \ |
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' properties\n' ) |
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out = proc.communicate()[0] |
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|
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import optparse |
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|
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usage = "usage: %prog [-d debug_level] [-n]" |
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|
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p = optparse.OptionParser(description="Monitor state of multicore pool and adjust size as needed", |
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usage=usage) |
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|
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p.add_option("-A",action="store_true",dest="addall",default=False, |
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help="add all eligible nodes to multicore pool") |
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p.add_option("-l",action="store",dest="logfile",default=None, |
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help="log actions and information to LOGFILE (default stdout)") |
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p.add_option("-L",action="store",dest="loglevel",default="INFO", |
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help="print messages of LOGLEVEL (DEBUG, INFO, WARNING, ..., default INFO") |
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p.add_option("-n",action="store_true",dest="noopt",default=False, |
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help="don't do anything, just print what would have been done") |
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p.add_option("-i",action="store_true",dest="info",default=False, |
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help="print info on all nodes in multicore pool") |
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|
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import logging |
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|
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opts, args = p.parse_args() |
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|
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# assuming loglevel is bound to the string value obtained from the |
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# command line argument. Convert to upper case to allow the user to |
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# specify --log=DEBUG or --log=debug |
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|
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numeric_level = getattr(logging, opts.loglevel.upper(), None) |
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if not isinstance(numeric_level, int): |
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raise ValueError('Invalid log level: %s' % loglevel) |
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if opts.logfile: |
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logging.basicConfig(format='%(asctime)s %(levelname)s %(message)s', |
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level=numeric_level,filename=opts.logfile) |
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else: |
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logging.basicConfig(format='%(asctime)s %(levelname)s %(message)s', |
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level=numeric_level) |
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|
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if os.path.isfile(UNDERPOP_NODES_FILE): |
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pkl_file = open(UNDERPOP_NODES_FILE,'rb') |
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nodes_too_few_jobs_last_run = pickle.load(pkl_file) |
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pkl_file.close() |
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else: |
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nodes_too_few_jobs_last_run = list() |
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|
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logging.debug("nodes from pickle file, marked from last run: " + \ |
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repr(nodes_too_few_jobs_last_run) ) |
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|
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wnodes = pbsnodes() |
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mcnodes = list() |
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waiting = None |
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node_tuples = None |
| 239 |
|
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for node in wnodes: |
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if node.name in CANDIDATE_NODES and node.state.count('offline') == 0: |
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mcnodes.append(node) |
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|
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draining_slots = 0 |
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mcdedicated = list() |
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draining_nodes = 0 |
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|
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for node in mcnodes: |
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if 'el6' not in node.properties and 'mc' in node.properties : |
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mcdedicated.append(node) |
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draining_slots += node.freeCpu |
| 252 |
if node.freeCpu > 0 : draining_nodes += 1 |
| 253 |
|
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if opts.info: |
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waiting, node_tuples = getmcjobinfo(mcdedicated) |
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for t in node_tuples: |
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if t[2] == 0: |
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print "%28s has %2d running mc jobs, %2d empty slots" % (t[0], t[2], t[3]) |
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else: |
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print "%28s has %2d running mc jobs, %2d empty slots, ratio %4.1f" % (t[0], t[2], t[3], float(t[3])/t[2]) |
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sys.exit(0) |
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candidate_nodes = list() |
| 263 |
for n in mcnodes: |
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if n not in mcdedicated: |
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candidate_nodes.append(n) |
| 266 |
|
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if opts.addall: |
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for grabbed_node in candidate_nodes: |
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logging.info("%s added to mc node pool" % (grabbed_node.name)) |
| 270 |
# candidate_nodes.remove(grabbed_node) |
| 271 |
if not opts.noopt: add_to_mc_pool(grabbed_node) |
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sys.exit(0) |
| 273 |
|
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# check for dedicated nodes with too few jobs |
| 275 |
|
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nodes_with_too_few_jobs = list() |
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|
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for node in mcdedicated: |
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logging.debug(node.name + " has " + repr(node.freeCpu) + " free slots") |
| 280 |
if node.freeCpu > MAXFREEPERNODE: |
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nodes_with_too_few_jobs.append(node) |
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|
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logging.debug("there are " + repr(len(nodes_with_too_few_jobs)) + \ |
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" nodes with too few jobs") |
| 285 |
|
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nodes_consistently_underpopulated = list() |
| 287 |
for n in nodes_with_too_few_jobs: |
| 288 |
if n.name in nodes_too_few_jobs_last_run: |
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nodes_consistently_underpopulated.append(n) |
| 290 |
|
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undcount = len(nodes_consistently_underpopulated) |
| 292 |
if undcount > 0: |
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logging.debug("there are " + repr(undcount) + \ |
| 294 |
" nodes with too few jobs that were also marked last run" ) |
| 295 |
|
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import random |
| 297 |
|
| 298 |
removed_a_node = False |
| 299 |
|
| 300 |
if undcount > 0: |
| 301 |
logging.info("nodes consistently underpopulated:") |
| 302 |
for n in nodes_consistently_underpopulated: |
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logging.info(" " + n.name) |
| 304 |
if undcount > 1: |
| 305 |
remcount = undcount / 2 # number to remove |
| 306 |
logging.info("going to remove " + repr(remcount) + " from mc pool") |
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else: |
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remcount = 1 |
| 309 |
|
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# find out how many running mc jobs each node has |
| 311 |
|
| 312 |
waiting, node_tuples = getmcjobinfo(nodes_consistently_underpopulated) |
| 313 |
|
| 314 |
for node_t in node_tuples[:remcount]: |
| 315 |
nname, nnode, running_mc, unused_slots = node_t |
| 316 |
logging.info("dumped %d empty slots, %d mc jobs on %s" % \ |
| 317 |
(unused_slots, running_mc, nname) ) |
| 318 |
if not opts.noopt : remove_from_mc_pool(nnode) |
| 319 |
nodes_with_too_few_jobs.remove(nnode) |
| 320 |
nodes_consistently_underpopulated.remove(nnode) |
| 321 |
removed_a_node = True |
| 322 |
|
| 323 |
namelist = list() |
| 324 |
if len(nodes_with_too_few_jobs) > 0: |
| 325 |
logging.debug("placing %d nodes " % (len(nodes_with_too_few_jobs)) + \ |
| 326 |
"with too few jobs on list for next run:") |
| 327 |
|
| 328 |
for n in nodes_with_too_few_jobs: |
| 329 |
logging.debug(n.name) |
| 330 |
namelist.append(n.name) |
| 331 |
if not opts.noopt: |
| 332 |
pkl_file = open(UNDERPOP_NODES_FILE,'wb') |
| 333 |
pickle.dump(namelist,pkl_file) |
| 334 |
pkl_file.close() |
| 335 |
if len(nodes_with_too_few_jobs) > 0 or removed_a_node : |
| 336 |
sys.exit(0) |
| 337 |
|
| 338 |
# if we survive to this point, all nodes 'dedicated' are being efficiently |
| 339 |
# used. are we draining less than the configured max? |
| 340 |
|
| 341 |
logging.debug("There are " + repr(len(mcdedicated)) + " dedicated nodes and " + \ |
| 342 |
repr(draining_slots) + " unused slots") |
| 343 |
if (MAXFREE - draining_slots) >= MAXFREEPERNODE: |
| 344 |
logging.debug("%d unused slots are permitted, so %d more" % (MAXFREE, MAXFREE - draining_slots)) |
| 345 |
logging.debug("headroom of more than %d+ slots means we can try to grab another node" % (MAXFREEPERNODE) ) |
| 346 |
if draining_nodes < MAXDRAIN : |
| 347 |
# first check if there are actually any waiting jobs to run; if not makes no sense to grab a node. |
| 348 |
waiting, node_tuples = getmcjobinfo(mcdedicated) |
| 349 |
if not waiting: |
| 350 |
logging.debug("No waiting jobs found, nothing to do") |
| 351 |
sys.exit(0) |
| 352 |
logging.debug("max %d node(s) with unused slots permitted, %d seen" % \ |
| 353 |
(MAXDRAIN, draining_nodes)) |
| 354 |
logging.debug("there are also waiting jobs: try to grab another node") |
| 355 |
# build a list of candidates to grab |
| 356 |
logging.debug("found %d candidate nodes to dedicate to mc" % len(candidate_nodes)) |
| 357 |
if len(candidate_nodes) < 1: |
| 358 |
logging.debug("no more nodes, bailing out, nothing more I can do") |
| 359 |
sys.exit(0) |
| 360 |
for nn in range(min(NODESPERGRAB,len(candidate_nodes))): |
| 361 |
# logging.debug("found %d candidate nodes to dedicate to mc" % len(candidate_nodes)) |
| 362 |
grabbed_node=random.choice(candidate_nodes) |
| 363 |
logging.info("%s added to mc node pool" % (grabbed_node.name)) |
| 364 |
candidate_nodes.remove(grabbed_node) |
| 365 |
if not opts.noopt: add_to_mc_pool(grabbed_node) |
| 366 |
else: |
| 367 |
logging.debug("There are %d nodes with unused slots (draining)" % (draining_nodes)) |
| 368 |
logging.debug("This equals or exceeds the configured max of %d" % (MAXDRAIN)) |
| 369 |
logging.debug("Doing nothing now") |
| 370 |
|
| 371 |
elif draining_slots > MAXFREE: |
| 372 |
|
| 373 |
# find out how many running mc jobs each node has |
| 374 |
|
| 375 |
waiting, node_tuples = getmcjobinfo(mcdedicated) |
| 376 |
|
| 377 |
slots_to_recover = draining_slots - MAXFREE |
| 378 |
logging.info("unused slot limit (%d) exceeded by %d " \ |
| 379 |
% (MAXFREE, slots_to_recover) + ": remove node(s) from mc pool") |
| 380 |
slots_recovered = 0 |
| 381 |
while slots_recovered < slots_to_recover: |
| 382 |
node_t = node_tuples.pop(0) |
| 383 |
nname, nnode, running_mc, unused_slots = node_t |
| 384 |
if unused_slots > 0: |
| 385 |
logging.info("dumped %d empty slots, %d mc jobs on %s" % \ |
| 386 |
(unused_slots, running_mc, nname) ) |
| 387 |
if not opts.noopt : remove_from_mc_pool(nnode) |
| 388 |
slots_recovered += unused_slots |
| 389 |
else: |
| 390 |
logging.debug("%d unused slots of allowed %d" % (draining_slots, MAXFREE)) |
| 391 |
logging.debug("difference is %d which is less than %d" % \ |
| 392 |
(MAXFREE - draining_slots, MAXFREEPERNODE) ) |
| 393 |
logging.debug("so: doing nothing now.") |
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